Motivation. Spatially-resolved transcriptomics has now enabled the quantification of high-throughput and transcriptome-wide gene expression in intact tissue while also retaining the spatial coordinates. Incorporating the precise spatial mapping of gene activity advances our understanding of intact tissuespecific biological processes. In order to interpret these novel spatial data types, interactive visualization tools are necessary. Results. We describe spatialLIBD, an R/Bioconductor package to interactively explore spatially-resolved transcriptomics data generated with the 10x Genomics Visium platform. The package contains functions to interactively access, visualize, and inspect the observed spatial gene expression data and data-driven clusters identified with supervised or unsupervised analyses, either on the user’s computer or through a web application. Availability. spatialLIBD is available at bioconductor.org/packages/spatialLIBD.
Our paper describing our package #spatialLIBD is finally out! 🎉🎉🎉— Brenda Pardo (@PardoBree) April 30, 2021
spatialLIBD is an #rstats / @Bioconductor package to visualize spatial transcriptomics data.
This is especially exciting for me as it is my first paper as a first author 🦑.https://t.co/COW013x4GA