Andrew E. Jaffe

Latest

• Molecular impact of nicotine and smoking exposure on the developing and adult mouse brain
• Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry.
• TrkB-dependent regulation of molecular signaling across septal cell types
• VistoSeg: Processing utilities for high-resolution images for spatially resolved transcriptomics data
• BiocMAP: A Bioconductor-friendly, GPU-Accelerated Pipeline for Bisulfite-Sequencing Data
• spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
• Amygdala and anterior cingulate transcriptomes from individuals with bipolar disorder reveal downregulated neuroimmune and synaptic pathways
• Genetics and Brain Transcriptomics of Completed Suicide
• recount3: summaries and queries for large-scale RNA-seq expression and splicing
• SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/Bioconductor-powered RNA-seq analyses
• Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods