Bioconductor

Cleaning up my R packages and config files

Today was an unusual day at work given the US Elections. This meant that I had fewer meetings than what I’ve had lately. Earlier in the day I noticed an email announcing that the Bioconductor 3.

Research Scientist: an academic career launch pad

After a long start to 2020 including the past four very busy weeks, I’m happy to announce that today March 16th 2020 I accepted a position as Research Scientist at the Lieber Institute for Brain Development in Baltimore, MD, USA.

Windows user space issues with installing R packages

Are you a Microsoft Windows R user? Does your Windows username include a space? Like Firstname Lastname. Then you might occassionally run into issues installing packages due to spaces.

CDSBMexico: remember to apply for BioC2019 travel scholarships

This blog post was first published at the CDSBMexico website. #CDSBMexico: remember to apply for BioC2019 travel scholarships!! Due date is March 15thhttps://t.co/iegG0qQzwu Let us help you! Here we give you some ideas 💡We can also give you feedback via Slack ✅#rstats #bioconductor @Bioconductor #bioc2019 #diversity #LatAm #rstatsES pic.

R Gene Regulatory Interaction Formulator For Inquiring Networks

This blog post was written by ME Martinez-Sanchez, S Muñoz, M Carrillo, E Azpeitia, D Rosenblueth and originally posted at the CDSB blog.1 In this blog post we will describe the package rGriffin (Martinez-Sanchez, Muñoz, Carrillo, Azpeitia, et al.

Latin American R/BioConductor Developers Workshop 2018

Today I’m excited to invite you to attend the Latin American R/BioConductor Developers Workshop 2018! It’ll be held in Cuernavaca, Mexico from July 30th to August 3rd, 2018. You can find the official announcement in the Bioconductor support website.

Updating R

As you might know by now, the latest R version was recently released (R 3.4.0). That means that you are highly encouraged to update your R installation. There are several ways to do this some of which are documented in these other blog posts: Tal Galili, 2013, Kris Eberwein, 2015.

Are you doing parallel computations in R? Then use BiocParallel

It’s the morning of the first day of oral conferences at #ENAR2016. I feel like I have a spidey sense since I woke up 3 min after an email from Jeff Leek; just a funny coincidence.

Where do I start using Bioconductor?

I was recently asked where do I get started with Bioconductor? and thought this would be a good short post. What is BioC? Briefly, Bioconductor (Gentleman, Carey, Bates, and others, 2004) is an open source project that hosts a wide range of tools for analyzing biological data with R (R Core Team, 2014).

Setting up your computer for bioinformatics/biostatistics and a compedium of resources

Jumping on the train set by Hilary Parker “The Setup (Part 1)" and Alyssa Frazee “my software/hardware setup”, I’m going to share my setup and hopefully add something new. They both did a great job already, so make sure you read their posts!