spatial

Lessons From Working On The Edge Of Human Brain Spatially-Resolved Transcriptomics
Spatial Biology West Coast US 2024
Thu, Dec 5, 2024
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Lessons From Working On The Edge Of Human Brain Spatially-Resolved Transcriptomics
Integrating gene expression and imaging data across Visium capture areas with visiumStitched
Background Visium is a widely-used spatially-resolved transcriptomics assay available from 10x Genomics. Standard Visium capture areas …
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Integrating gene expression and imaging data across Visium capture areas with visiumStitched
Lessons from spatially-resolved transcriptomics of postmortem human brain data projects
Last updated on Mon, Aug 12, 2024
Project Slides
Lessons from spatially-resolved transcriptomics of postmortem human brain data projects
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex
The molecular organization of the human neocortex historically has been studied in the context of its histological layers. However, …
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A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex
HumanPilot: first spatially-resolved transcriptomics study using Visium
Would you prefer a video walkthrough over reading this blog post? Check out this explainer video 🎥 A few years ago now (2021) we published a study we refer to with a very generic name: HumanPilot (Maynard, Collado-Torres, Weber, Uytingco et al.
Last updated on Sat, May 25, 2024 13 min read Science, LIBD
Project
2024 Current Topics in Biostatistics guest seminar
Thanks @kenzhou86 & Margaret Taub for inviting to present at the Current Topics in Biostatistics seminar It was fun reminiscing about the past & sharing my experience. Got them to laugh a few times ^^
Last updated on Mon, Feb 26, 2024
Project Slides
2024 Current Topics in Biostatistics guest seminar
The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics
Norepinephrine (NE) neurons in the locus coeruleus (LC) make long-range projections throughout the central nervous system, playing …
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The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics
escheR: Unified multi-dimensional visualizations with Gestalt principles
The creation of effective visualizations is a fundamental component of data analysis. In biomedical research, new challenges are …
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escheR: Unified multi-dimensional visualizations with Gestalt principles
Spatiotemporal analysis of gene expression in the human dentate gyrus reveals age-associated changes in cellular maturation and neuroinflammation
The dentate gyrus of the hippocampus is important for many cognitive functions, including learning, memory, and mood. Here, we …
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Spatiotemporal analysis of gene expression in the human dentate gyrus reveals age-associated changes in cellular maturation and neuroinflammation
VistoSeg: Processing utilities for high-resolution images for spatially resolved transcriptomics data
Spatially resolved transcriptomics (SRT) is a growing field that links gene expression to anatomical context. SRT approaches that use …
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VistoSeg: Processing utilities for high-resolution images for spatially resolved transcriptomics data