L. Collado-Torres
L. Collado-Torres
Home
Projects
Publications
Talks
Blog
CV
Mentoring
Teaching
Contact
Light
Dark
Automatic
spatial
SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor
Summary
SpatialExperiment is a new data infrastructure for storing and accessing spatially resolved transcriptomics data, implemented …
Dario Righelli __*__
,
Lukas M. Weber __*__
,
Helena L. Crowell __*__
,
Brenda Pardo
,
Leonardo Collado-Torres
,
Shila Ghazanfar
,
Aaron T. L. Lun,
,
Stephanie C. Hicks †
,
Davide Risso †
Preprint
PDF
Cite
Code
Project
Source Document
DOI
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
Motivation
. Spatially-resolved transcriptomics has now enabled the quantification of high-throughput and transcriptome-wide gene …
Brenda Pardo
,
Abby Spangler
,
Lukas M. Weber
,
Stephanie C. Hicks
,
Andrew E. Jaffe
,
Keri Martinowich
,
Kristen R. Maynard
,
Leonardo Collado-Torres
Preprint
Cite
Code
Project
Slides
Source Document
DOI
BioTuring webinar
BioTuring webinar presented along with Kristen R Maynard from the Lieber Institute for Brain Development.
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
Project
Slides
Video
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
We used the 10x Genomics Visium platform to define the spatial topography of gene expression in the six-layered human dorsolateral …
Kristen R Maynard __*__
,
[__Leonardo Collado-Torres__](/authors/admin) __*__
,
Lukas M. Weber
,
Cedric Uytingco
,
Brianna K. Barry
,
Stephen R. Williams
,
Joseph L. Catallini II
,
Matthew N. Tran
,
Zachary Besich
,
Madhavi Tippani
,
Jennifer Chew
,
Yifeng Yin
,
Joel E. Kleinman
,
Thomas M. Hyde
,
Nikhil Rao
,
Stephanie C. Hicks
,
Keri Martinowich †
,
Andrew E Jaffe †
Preprint
PDF
Cite
Code
Dataset
Project
Source Document
DOI
CDC/ATSDR R User Group
Guest presentation for the CDC/ATSDR R User Group on spatialLIBD and recount3
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
Project
Project
Slides
Video
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
Poster on the spatialLIBD project for BioC2020.
Leonardo Collado-Torres
PDF
Project
DOI
Transcriptome-Scale Spatial Gene Expression in the Human Dorsolateral Prefrontal Cortex
Webinar for The Scientist sponsored by 10x Genomics. Approximately 600 individuals registered for the webinar and you can watch it on demand. I presented this talk at LIIGH-UNAM 2020 for LCG-EJ-UNAM students and during the CDSB2020 workshop.
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
Project
Slides
spatial
Human brain spatial transcriptomics work using Visium from 10x Genomics
#spatialLIBD
spatialLIBD shiny app
Bioconductor
Cite
×
