ASHG18 tweet summary day 2

Continuing from my ASHG18 day 1 post, here’s my list of tweets from day 2. Note that I changed sessions a few times.

6E 10:30 am

Nanibaa’ Garrison

Maile Taualii

β€œNobody wakes up thinking how can I harm indigenous populations!”

Nadine Caron

Ngiare Brown

Third time she mentioned β€œsexy research”. I thought that this term was frowned upon, maybe it’s not.

Maui Hudson

He made us laugh with his conflict of interest slide. No commercial interests. Just interest in indigenous genomics and helping others.

Issue with open data. They want to control how the data is re-used. Like for imputation: what are they looking at? Is it something they agree?

6C 11:30 am

Kelly East

(others made better tweets!)

I guess that it’s for US scientists, but I don’t think of the β€œDeep South” in the US when I hear β€œSouthSeq”. Anyway, SouthSeq looks like a great project with many ways to train others in genetics.

β€œWe are not going to run genetic providers out of jobs”. Loved this quote!

Chris Gunter

35,000 page views on DNA awareness day3. 23andMe did a survey study in March 2018

Other (morning)

20BC 4:15 pm (4:23)

Semanti Mukherjee

Chimene Kesserwan:

Cynthia Zepeda

Xiaowu Gai

He thanked others for uploading data and making it publicly available so bioinformaticians like him can download it and re-analyze it. I totally agree with him!

6C 5:15 pm

Julio Barrera

Replaced by Chiba-Falek (lab PI).

Single cell (Neuron/glia)( ATAC-seq + RNA-seq + case-control data studying LOAD. RNA + ATAC matches.

Yungil Kim

PI Panos Roussos. Single cell data.

Other (afternoon)

20 BC 6 pm

Christopher Lau

Matt Velinder

20 A 6:42 pm

Ira Hall

Controlling for a nearby pLI gene? I’ve seen pLI mentioned a few times. Gotta read more about it!

Sarcasm/fun

plus they have a 50% off discount

Diversity

Motivational

Acknowledgements

This blog post was made possible thanks to:

and everyone who wrote tweets with the ASHG18 hashtag!

References

[1] C. Boettiger. knitcitations: Citations for β€˜Knitr’ Markdown Files. R package version 1.0.8. 2017. URL: https://CRAN.R-project.org/package=knitcitations.

[2] G. CsΓ‘rdi, R. core, H. Wickham, W. Chang, et al. sessioninfo: R Session Information. R package version 1.1.0.9000. 2018. URL: https://github.com/r-lib/sessioninfo#readme.

[3] A. OleΕ›, M. Morgan and W. Huber. BiocStyle: Standard styles for vignettes and other Bioconductor documents. R package version 2.8.2. 2018. URL: https://github.com/Bioconductor/BiocStyle.

[4] Y. Xie, A. P. Hill and A. Thomas. blogdown: Creating Websites with R Markdown. ISBN 978-0815363729. Boca Raton, Florida: Chapman and Hall/CRC, 2017. URL: https://github.com/rstudio/blogdown.

Reproducibility

## ─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────
##  setting  value                                      
##  version  R version 3.5.1 Patched (2018-10-14 r75439)
##  os       macOS High Sierra 10.13.6                  
##  system   x86_64, darwin15.6.0                       
##  ui       X11                                        
##  language (EN)                                       
##  collate  en_US.UTF-8                                
##  ctype    en_US.UTF-8                                
##  tz       America/Los_Angeles                        
##  date     2018-10-17                                 
## 
## ─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────
##  package       * version    date       lib source                            
##  assertthat      0.2.0      2017-04-11 [1] CRAN (R 3.5.0)                    
##  backports       1.1.2      2017-12-13 [1] CRAN (R 3.5.0)                    
##  bibtex          0.4.2      2017-06-30 [1] CRAN (R 3.5.0)                    
##  BiocStyle     * 2.8.2      2018-05-30 [1] Bioconductor                      
##  blogdown        0.8        2018-07-15 [1] CRAN (R 3.5.0)                    
##  bookdown        0.7        2018-02-18 [1] CRAN (R 3.5.0)                    
##  cli             1.0.1      2018-09-25 [1] CRAN (R 3.5.0)                    
##  colorout      * 1.2-0      2018-05-03 [1] Github (jalvesaq/colorout@c42088d)
##  crayon          1.3.4      2017-09-16 [1] CRAN (R 3.5.0)                    
##  digest          0.6.18     2018-10-10 [1] CRAN (R 3.5.0)                    
##  evaluate        0.12       2018-10-09 [1] CRAN (R 3.5.0)                    
##  htmltools       0.3.6      2017-04-28 [1] CRAN (R 3.5.0)                    
##  httr            1.3.1      2017-08-20 [1] CRAN (R 3.5.0)                    
##  jsonlite        1.5        2017-06-01 [1] CRAN (R 3.5.0)                    
##  knitcitations * 1.0.8      2017-07-04 [1] CRAN (R 3.5.0)                    
##  knitr           1.20       2018-02-20 [1] CRAN (R 3.5.0)                    
##  lubridate       1.7.4      2018-04-11 [1] CRAN (R 3.5.0)                    
##  magrittr        1.5        2014-11-22 [1] CRAN (R 3.5.0)                    
##  plyr            1.8.4      2016-06-08 [1] CRAN (R 3.5.0)                    
##  R6              2.3.0      2018-10-04 [1] CRAN (R 3.5.0)                    
##  Rcpp            0.12.19    2018-10-01 [1] CRAN (R 3.5.1)                    
##  RefManageR      1.2.0      2018-04-25 [1] CRAN (R 3.5.0)                    
##  rmarkdown       1.10       2018-06-11 [1] CRAN (R 3.5.0)                    
##  rprojroot       1.3-2      2018-01-03 [1] CRAN (R 3.5.0)                    
##  sessioninfo   * 1.1.0.9000 2018-10-02 [1] Github (r-lib/sessioninfo@4f91fad)
##  stringi         1.2.4      2018-07-20 [1] CRAN (R 3.5.0)                    
##  stringr         1.3.1      2018-05-10 [1] CRAN (R 3.5.0)                    
##  withr           2.1.2      2018-03-15 [1] CRAN (R 3.5.0)                    
##  xfun            0.3        2018-07-06 [1] CRAN (R 3.5.0)                    
##  xml2            1.2.0      2018-01-24 [1] CRAN (R 3.5.0)                    
##  yaml            2.2.0      2018-07-25 [1] CRAN (R 3.5.0)                    
## 
## [1] /Library/Frameworks/R.framework/Versions/3.5/Resources/library

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