AE Jaffe

Latest

• recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations]
• Altered expression of histamine signaling genes in autism spectrum disorder
• Reproducible RNA-seq analysis using recount2
• Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive
• Flexible expressed region analysis for RNA-seq with derfinder
• Rail-RNA: Scalable analysis of RNA-seq splicing and coverage
• regionReport: Interactive reports for region-level and feature-level genomic analyses
• Measurement, Summary, and Methodological Variation in RNA-sequencing in Statistical Analysis of Next Generation Sequencing Data