Along with Andrew Jaffe, I co-mentored Amy Peterson in 2017-2018. Check her website for more information about her.
Amy’s MPH capstone presentation
Here are some of projects she did with me (taken from her website):
Projects
Worked in collaboration with Mina Ryten’s lab at University College London to analyze Genotype-Tissue Expression (GTEx) project data to explore gene expression variability across brain regions
Analyzed GTEx brain samples from recount2 using recount.bwtool with JHPCE, a high-performance computing environment
Capstone: Applying Statistical Correction for Brain Tissue Degradation to Gene Expression in Schizophrenia
Analyzed postmortem human brain RNA-sequencing data in R using Bioconductor packages with JHPCE
Presentations
MPH Capstone Presentation “Applying Statistical Correction for Brain Tissue RNA Degradation to Gene Expression Differences in Schizophrenia” (May 4, 2018) slides.
Presented “Postmortem Human Brain RNA-seq Analyses with Public and Private Data” at Delta Omega Poster Competition at JHPSH PDF (February 28, 2018).
Presented “Expression Profiles in GTEx Data” at the Leekgroup meeting (February 19, 2018) slides.