derfinder

Using Data Science to Study Human Brain Genomic Measurements
Motivating SACNAS2016 attendees to pursue a career in STEM by showcasing my research
Last updated on Fri, May 14, 2021
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Using Data Science to Study Human Brain Genomic Measurements
Flexible expressed region analysis for RNA-seq with derfinder
derfinder analysis using expressed region-level and single base-level approaches provides a compromise between full transcript reconstruction and feature-level analysis. The package is available from Bioconductor.
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Flexible expressed region analysis for RNA-seq with derfinder
Rail-RNA: Scalable analysis of RNA-seq splicing and coverage
We describe Rail-RNA, a cloud-enabled spliced aligner that analyzes many samples at once. Rail-RNA eliminates redundant work across samples, making it more efficient as samples are added. For many samples, Rail-RNA is more accurate than annotation-assisted aligners.
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Rail-RNA: Scalable analysis of RNA-seq splicing and coverage
Annotation-agnostic differential expression and binding analyses
L. Collado-Torres’s Johns Hopkins Bloomberg School of Public Health, Department of Biostatistics Ph.D. defense talk
Last updated on Fri, May 14, 2021
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Annotation-agnostic differential expression and binding analyses
Annotation-agnostic differential expression analysis
derfinder overview for ENAR2016
Last updated on Fri, May 14, 2021
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Annotation-agnostic differential expression analysis
Annotation-agnostic differential expression analysis
derfinder overview for the JHU Genomics Symposium 2015
Last updated on Fri, May 14, 2021
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Annotation-agnostic differential expression analysis
Annotation-agnostic RNA-seq differential expression analysis software
Poster presented at ASHG2015 and IDIES2015
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Annotation-agnostic RNA-seq differential expression analysis software
Dissecting human brain development at high resolution using RNA-seq
derfinder overview for ENAR2015
Last updated on Fri, May 14, 2021
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Dissecting human brain development at high resolution using RNA-seq
Developmental regulation of human cortex transcription and its clinical relevance at single base resolution
Transcriptome analysis of human brain provides fundamental insight into development and disease, but it largely relies on existing …
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Developmental regulation of human cortex transcription and its clinical relevance at single base resolution
derfinder tutorial
derfinder tutorial for Leek’s group lab meeting
Last updated on Fri, May 14, 2021
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derfinder tutorial