L. Collado-Torres
L. Collado-Torres
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recount2
Reproducible RNA-seq analysis with recount2 and recount-brain
Work in progress presentation on recount-brain for the Joint Genomics Meeting
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
Project
Slides
Non-coding Class Switch Recombination-Related Transcription in Human Normal and Pathological Immune Responses
Background: Antibody class switch recombination (CSR) to IgG, IgA or IgE is a hallmark of adaptive immunity, allowing antibody function …
Helena Kuri-Magaña
,
Leonardo Collado-Torres
,
Andrew E Jaffe
,
Humberto Valdovinos-Torres
,
Marbella Ovilla-Muñoz
,
Juan M Téllez-Sosa
,
Laura C Bonifaz-Alfonzo
,
Jesús Martínez-Barnetche
Preprint
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Project
DOI
From learning to using to teaching to developing R
Keynote to kickoff the CDSB Mexico 2018 R/Bioconductor workshop
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
Project
Project
Slides
Reproducible RNA-seq analysis with recount2 and recount-brain
Guest lecture for LCG-UNAM spanning some recent research
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
Project
Slides
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor
recount2 overview for the webinar organized by Dennis Dal
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
Project
Slides
Improving the value of public RNA-seq expression data by phenotype prediction
Background: Publicly available genomic data are a valuable resource for studying normal human variation and disease, but these data are …
Shannon SE
,
Leonardo Collado-Torres
,
Jaffe AE
,
Leek JT
Preprint
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Code
Project
DOI
RNA-seq transcript quantification from reduced-representation data in recount2
More than 70,000 short-read RNA-sequencing samples are publicly available through the recount2 project, a curated database of summary …
Fu J
,
Kammers K
,
Nellore A
,
Leonardo Collado-Torres
,
Leek JT
,
Taub MA
Preprint
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Project
DOI
Getting started with recount2 and accessing it via R
Poster presented at IDIES2017
Leonardo Collado-Torres
PDF
Project
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations]
The recount2 resource is composed of over 70,000 uniformly processed human RNA-seq samples spanning TCGA and SRA, including GTEx. The …
[__L Collado-Torres__](/authors/admin) †
,
A Nellore
,
AE Jaffe
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Bioconductor
BioC2017 Workshop
recount workshop: Learn to leverage 70,000 human RNA-seq samples for your projects
R/Bioconductor workshop on how to use recount2
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
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