recount2

Reproducible RNA-seq analysis with recount2 and recount-brain
Work in progress presentation on recount-brain for the Joint Genomics Meeting
Last updated on Fri, May 14, 2021
Project Slides
Reproducible RNA-seq analysis with recount2 and recount-brain
Non-coding Class Switch Recombination-Related Transcription in Human Normal and Pathological Immune Responses
Background: Antibody class switch recombination (CSR) to IgG, IgA or IgE is a hallmark of adaptive immunity, allowing antibody function …
Preprint PDF Cite Project DOI
Non-coding Class Switch Recombination-Related Transcription in Human Normal and Pathological Immune Responses
From learning to using to teaching to developing R
Keynote to kickoff the CDSB Mexico 2018 R/Bioconductor workshop
Last updated on Fri, May 14, 2021
Project Project Slides
From learning to using to teaching to developing R
Reproducible RNA-seq analysis with recount2 and recount-brain
Guest lecture for LCG-UNAM spanning some recent research
Last updated on Fri, May 14, 2021
Project Slides
Reproducible RNA-seq analysis with recount2 and recount-brain
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor
recount2 overview for the webinar organized by Dennis Dal
Last updated on Fri, May 14, 2021
Project Slides
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor
Improving the value of public RNA-seq expression data by phenotype prediction
Background: Publicly available genomic data are a valuable resource for studying normal human variation and disease, but these data are …
Preprint PDF Cite Code Project DOI
Improving the value of public RNA-seq expression data by phenotype prediction
RNA-seq transcript quantification from reduced-representation data in recount2
More than 70,000 short-read RNA-sequencing samples are publicly available through the recount2 project, a curated database of summary …
Preprint PDF Cite Project DOI
RNA-seq transcript quantification from reduced-representation data in recount2
Getting started with recount2 and accessing it via R
Poster presented at IDIES2017
PDF Project
Getting started with recount2 and accessing it via R
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations]
The recount2 resource is composed of over 70,000 uniformly processed human RNA-seq samples spanning TCGA and SRA, including GTEx. The …
PDF Cite Code Project DOI Bioconductor BioC2017 Workshop
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor [version 1; referees: 1 approved, 2 approved with reservations]
recount workshop: Learn to leverage 70,000 human RNA-seq samples for your projects
R/Bioconductor workshop on how to use recount2
Last updated on Fri, May 14, 2021
PDF Code Project Slides
recount workshop: Learn to leverage 70,000 human RNA-seq samples for your projects