Today was a big day. I care about many things including diversity in science (STEM) and building a community of R users and developers in Mexico. Both moved forward in two completely separate conferences: one in Mexico: CDSBMexico; and one in Canada: JSM2018.
CDSBMexico This was a very important day for me. It was the beginning of the Latin American R/BioConductor Developers Workshop 2018 in Cuernavaca, Mexico. I already wrote a blog post about why I was super excited about CDSBMexico, but briefly it’s because this is something we’ve been wanting to see become a reality for years and have been working towards it.
I have recently been getting reminder emails from the Science & SciLifeLab Prize for Young Scientists. The application deadline is July 15th, 2018!
Last year I submitted an entry to this competition and I enjoyed the experience, even if it was a bit rushed. The process of joining the competition is relatively straight forward:
Write an essay about your Ph.D. thesis work. Get a recommendation letter from your Ph.
This is a joint blog post between Stephanie Hicks and Leonardo Collado-Torres. We want to share with you our experience using Slack and why you should join us. This post is in an interview style.
What is Slack? [SH] Slack is a communication tool for teams. The main idea is you have individual chat rooms (referred to as channels that always begin with the # symbol), which are organized by topics.
I recently participated for the first time in a silent retreat (6 hrs) as part of a Mindfulness-Based Stress Reduction course. I’ve really been enjoying this course and the experience of learning new ways (for me) to live better and enjoy life more. If you haven’t heard of mindfulness before (like me a few months ago), Wikipedia defines it as:
Mindfulness is the psychological process of bringing one's attention to experiences occurring in the present moment, which can be developed through the practice of meditation and other training.
It’s Friday 7pm and it’s been a long week with ups and downs1. But I’m enthused as I write this blog post. In less than a month from now I’ll be attending rOpenSci unconf18 and it’ll be my first time at this type of event. Yay!
Building on my streak of good news, I'm delighted to have been selected to attend @rOpenSci #Unconf18 https://t.co/Xe6lojB7TS ^_^ Also, thanks to the https://t.co/o5OwUWEaBD and @LieberInstitute for their support!
Today I’m excited to invite you to attend the Latin American R/BioConductor Developers Workshop 2018! It’ll be held in Cuernavaca, Mexico from July 30th to August 3rd, 2018. You can find the official announcement in the Bioconductor support website. Let me share with you why I’m excited about this workshop.
At BioC2017, Alejandro Reyes and I talked for a while about the low representation of Latin Americans through out the years that either of us have attended the BioC meetings1.
In a recent blog post I wrote about having a template for blogdown posts. I wanted to know if it was possible to do this and make my life (and others hopefully) easier for writing new blog posts that are ready to go with the features I frequently re-use.
In my case, I like using BiocStyle (Oleś, Morgan, and Huber, 2017) for functions such as CRANpkg(), Biocpkg() and Githubpkg(). I also like using knitcitations (Boettiger, 2017) for citing with citep() packages or papers; I use citation() and bib_metadata() to get the necessary information, respectively.
Have you ever tried inserting an image into a blogdown post? Maybe you have, or maybe you tried and gave up. Lets first review the hard way before getting to the solution I contributed.
The hard way The process involves copying the target image to the static directory that corresponds to the blogdown post. Lets say that your post is called 2018-03-07-my-new-post.Rmd and lives at content/post/, so it’s full path is content/post/2018-03-07-my-new-post.
This blog post is mostly for myself but maybe it’s useful to others. It contains my current R markdown blog template. I initially posted this as a question at StackOverflow. Then I read how much a burden we put in Yihui Xie and decided that my current setup (copy-pasting) works just fine. In any case using blogdown with the RStudio IDE is much simpler than what I used to do in the past with jekyll or with even my prior setup with blogdown.
As you might know by now, the latest R version was recently released (R 3.4.0). That means that you are highly encouraged to update your R installation. There are several ways to do this some of which are documented in these other blog posts: Tal Galili, 2013, Kris Eberwein, 2015. You would think that it's just a matter of downloading the latest R installer for your OS, installing it, and continuing your analysis.