L. Collado-Torres
L. Collado-Torres
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spatialDLPFC
escheR: Unified multi-dimensional visualizations with Gestalt principles
The creation of effective visualizations is a fundamental component of data analysis. In biomedical research, new challenges are …
Boyi Guo
,
Louise A. Huuki-Myers
,
Melissa Grant-Peters
,
Leonardo Collado-Torres
,
Stephanie C. Hicks
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Project
DOI
Preprint
Code
Bioconductor
Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex
The molecular organization of the human neocortex has been historically studied in the context of its histological layers. However, …
Louise A. Huuki-Myers
,
Abby Spangler
,
Nicholas J. Eagles
,
Kelsey D. Montgomery
,
Sang Ho Kwon
,
Boyi Guo
,
Melissa Grant-Peters
,
Heena R. Divecha
,
Madhavi Tippani
,
Chaichontat Sriworarat
,
Annie B. Nguyen
,
Prashanthi Ravichandran
,
Matthew N. Tran
,
Arta Seyedian
,
PsychENCODE consortium
,
Thomas M. Hyde
,
Joel E. Kleinman
,
Alexis Battle
,
Stephanie C. Page
,
Mina Ryten
,
Stephanie C. Hicks
,
Keri Martinowich
,
Leonardo Collado-Torres †
,
Kristen R. Maynard †
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Project
DOI
Preprint
Code
snRNA-seq code
Documentation
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments
High-resolution and multiplexed imaging techniques are giving us an increasingly detailed observation of a biological system. However, …
Chaichontat Sriworarat
,
Annie Nguyen
,
Nicholas J. Eagles
,
Leonardo Collado-Torres
,
Keri Martinowich
,
Kristen R. Maynard †
,
Stephanie C. Hicks †
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Project
DOI
Preprint
Samui Browser
Code
VistoSeg: processing utilities for high-resolution Visium/Visium-IF images for spatial transcriptomics data
Background
: Spatial transcriptomics is a next-generation sequencing technology that combines the strengths of transcriptome-wide …
Madhavi Tippani
,
Heena R. Divecha
,
Joseph L. Catallini II
,
Sang Ho Kwon
,
Lukas M. Weber
,
Abby Spangler
,
Andrew E. Jaffe
,
Stephanie C. Hicks
,
Keri Martinowich
,
Leonardo Collado-Torres
,
Stephanie C. Page †
,
Kristen R. Maynard †
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Project
DOI
Preprint
Code
Documentation
spatial
Human brain spatial transcriptomics work using Visium from 10x Genomics
#Visium_SPG_AD
#spatialDLPFC
#spatialLIBD
spatialLIBD shiny app
spatialLIBD at Bioconductor
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