Projects

deconvolution
Deciphering proportions of cell types on human brain postmortem bulk RNA-seq data using snRNA-seq data as the reference
#TREG TREG at Bioconductor
deconvolution
recount3
recount3: summaries and queries for large-scale RNA-seq expression and splicing
#recount3 recount3 website Bioconductor
recount3
spatial
Human brain spatial transcriptomics work using Visium from 10x Genomics
#Visium_SPG_AD #spatialDLPFC #spatialLIBD spatialLIBD shiny app spatialLIBD at Bioconductor
spatial
BrainSEQ™ Consortium
BrainSeq Consortium lead by LIBD to understand the genetics and gene expression variability in psychiatric disorder including schizorphenia, bipolar disorder, and major depression disorder.
BrainSEQ at LIBD eQTL browser
BrainSEQ™ Consortium
recount2
Uniform processing of human RNA-seq data to improve usability and power methods development
#recount2 recount2 website Bioconductor
recount2
derfinder
Annotation-agnostic methods for gene expression data
#derfinder Bioconductor
derfinder