L. Collado-Torres
L. Collado-Torres
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Bioconductor
Extending Spatial Analysis with R/Bioconductor and beyond
Spatial Biology US 2021
Leonardo Collado-Torres
Last updated on Tue, May 9, 2023
Project
Slides
Cleaning up my R packages and config files
Today was an unusual day at work given the US Elections. This meant that I had fewer meetings than what I’ve had lately. Earlier in the day I noticed an email announcing that the Bioconductor 3.
Last updated on Tue, Jul 11, 2023
6 min read
rstats
Research Scientist: an academic career launch pad
After a long start to 2020 including the past four very busy weeks, I’m happy to announce that today March 16th 2020 I accepted a position as Research Scientist at the Lieber Institute for Brain Development in Baltimore, MD, USA.
Last updated on Tue, Jul 11, 2023
6 min read
rstats
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Science
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LIBD
Windows user space issues with installing R packages
Are you a Microsoft Windows R user? Does your Windows username include a space? Like Firstname Lastname. Then you might occassionally run into issues installing packages due to spaces. Solutions You could either re-install Windows with a username that has no spaces such as Lastname ^[This is the case in the Bioconductor Windows build machine where the username is biocbuild as you can see here.
Last updated on Tue, Jul 11, 2023
11 min read
rstats
CDSBMexico: remember to apply for BioC2019 travel scholarships
This blog post was first published at the CDSBMexico website. #CDSBMexico: remember to apply for BioC2019 travel scholarships!! Due date is March 15thhttps://t.co/iegG0qQzwu Let us help you! Here we give you some ideas 💡We can also give you feedback via Slack ✅#rstats #bioconductor @Bioconductor #bioc2019 #diversity #LatAm #rstatsES pic.
Last updated on Tue, Jul 11, 2023
7 min read
rstats
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Conference
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UNAM
R Gene Regulatory Interaction Formulator For Inquiring Networks
This blog post was written by ME Martinez-Sanchez, S Muñoz, M Carrillo, E Azpeitia, D Rosenblueth and originally posted at the CDSB blog.1 In this blog post we will describe the package rGriffin (Martinez-Sanchez, Muñoz, Carrillo, Azpeitia, et al.
Last updated on Sun, May 1, 2022
8 min read
rstats
,
UNAM
Latin American R/BioConductor Developers Workshop 2018
Today I’m excited to invite you to attend the Latin American R/BioConductor Developers Workshop 2018! It’ll be held in Cuernavaca, Mexico from July 30th to August 3rd, 2018. You can find the official announcement in the Bioconductor support website.
Last updated on Tue, Jul 11, 2023
6 min read
rstats
,
UNAM
Updating R
As you might know by now, the latest R version was recently released (R 3.4.0). That means that you are highly encouraged to update your R installation. There are several ways to do this some of which are documented in these other blog posts: Tal Galili, 2013, Kris Eberwein, 2015.
Last updated on Tue, Jul 24, 2018
4 min read
rstats
Are you doing parallel computations in R? Then use BiocParallel
It’s the morning of the first day of oral conferences at #ENAR2016. I feel like I have a spidey sense since I woke up 3 min after an email from Jeff Leek; just a funny coincidence.
Last updated on Tue, Jul 24, 2018
8 min read
rstats
Where do I start using Bioconductor?
I was recently asked where do I get started with Bioconductor? and thought this would be a good short post. What is BioC? Briefly, Bioconductor (Gentleman, Carey, Bates, and others, 2004) is an open source project that hosts a wide range of tools for analyzing biological data with R (R Core Team, 2014).
Last updated on Mon, Jan 23, 2017
4 min read
rstats
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