bulk

Sex affects transcriptional associations with schizophrenia across the dorsolateral prefrontal cortex, hippocampus, and caudate nucleus
Schizophrenia is a complex neuropsychiatric disorder with sexually dimorphic features, including differential symptomatology, drug …
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Sex affects transcriptional associations with schizophrenia across the dorsolateral prefrontal cortex, hippocampus, and caudate nucleus
Comment on: What genes are differentially expressed in individuals with schizophrenia? A systematic review
Following the recent review by Merikangas et al. summarizing differential gene expression in schizophrenia, we wanted to provide …
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Comment on: What genes are differentially expressed in individuals with schizophrenia? A systematic review
deconvolution
Deciphering proportions of cell types on human brain postmortem bulk RNA-seq data using snRNA-seq data as the reference
#TREG TREG at Bioconductor
deconvolution
R/Bioconductor-powered Team Data Science (TLDR 2022)
For an overview of our recent work, check this video and companion slides.
Last updated on Tue, May 9, 2023
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R/Bioconductor-powered Team Data Science (TLDR 2022)
recount3
recount3: summaries and queries for large-scale RNA-seq expression and splicing
#recount3 recount3 website Bioconductor
recount3
BrainSEQ™ Consortium
BrainSeq Consortium lead by LIBD to understand the genetics and gene expression variability in psychiatric disorder including schizorphenia, bipolar disorder, and major depression disorder.
BrainSEQ at LIBD eQTL browser
BrainSEQ™ Consortium
recount2
Uniform processing of human RNA-seq data to improve usability and power methods development
#recount2 recount2 website Bioconductor
recount2
derfinder
Annotation-agnostic methods for gene expression data
#derfinder Bioconductor
derfinder