spatialLIBD

Integrating gene expression and imaging data across Visium capture areas with visiumStitched
Background Visium is a widely-used spatially-resolved transcriptomics assay available from 10x Genomics. Standard Visium capture areas …
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Integrating gene expression and imaging data across Visium capture areas with visiumStitched
Lessons from spatially-resolved transcriptomics of postmortem human brain data projects
Last updated on Mon, Aug 12, 2024
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Lessons from spatially-resolved transcriptomics of postmortem human brain data projects
HumanPilot: first spatially-resolved transcriptomics study using Visium
Would you prefer a video walkthrough over reading this blog post? Check out this explainer video 🎥 A few years ago now (2021) we published a study we refer to with a very generic name: HumanPilot (Maynard, Collado-Torres, Weber, Uytingco et al.
Last updated on Sat, May 25, 2024 13 min read Science, LIBD
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2024 Current Topics in Biostatistics guest seminar
Thanks @kenzhou86 & Margaret Taub for inviting to present at the Current Topics in Biostatistics seminar It was fun reminiscing about the past & sharing my experience. Got them to laugh a few times ^^
Last updated on Mon, Feb 26, 2024
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2024 Current Topics in Biostatistics guest seminar
Lessons from spatially-resolved transcriptomics of postmortem human brain data projects
Join me and others for free** at #FOGBoston October 4-5 2023 https://t.co/5BGgkBKZuN ⚾️🧦🎉 I'll talk about our work at @LieberInstitute @jhubiostat on spatially-resolved transcriptomics using #Visium #VisiumSPG by @10xGenomics 🎫 https://t.
Last updated on Mon, Feb 26, 2024
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Lessons from spatially-resolved transcriptomics of postmortem human brain data projects
Studying the human prefrontal cortex transcriptome at different resolutions
¡Seguimos! #LCG20 Simposio # 5: Spatial Transcriptomics https://t.co/I8J3PXRqAT @ccg_unam @ibt_unam @unammorelos @lcolladotor @daniela_oaks @roramirezf94 #EnVivo pic.twitter.com/mcrdyTABqa — LCG UNAM (@lcgunam) August 31, 2023
Last updated on Mon, Feb 26, 2024
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Studying the human prefrontal cortex transcriptome at different resolutions
BioC2023 Package Demo: analyzing spatially-resolved transcriptomics data from Visium using spatialLIBD
spatialLIBD workshop for BioC2023
Last updated on Mon, Feb 26, 2024
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BioC2023 Package Demo: analyzing spatially-resolved transcriptomics data from Visium using spatialLIBD
Lessons from working on the edge of human brain transcriptomics with spatially-resolved transcriptomics and deconvolution
Invited seminar by Sebastian Guelfi
Last updated on Mon, Feb 26, 2024
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Lessons from working on the edge of human brain transcriptomics with spatially-resolved transcriptomics and deconvolution
Harnessing the power of spatially-resolved transcriptomics one step at a time
Invited seminar by Pilar Alvarez Jerez and Cornelis Blauwendraat
Last updated on Tue, Jun 20, 2023
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Harnessing the power of spatially-resolved transcriptomics one step at a time
Harnessing the power of spatially-resolved transcriptomics one step at a time
Invited seminar by John Hardy
Last updated on Tue, Jun 20, 2023
Project Slides
Harnessing the power of spatially-resolved transcriptomics one step at a time