L. Collado-Torres
L. Collado-Torres
Home
Projects
Publications
Talks
Blog
CV
Mentoring
Teaching
Contact
Light
Dark
Automatic
recount2
Detection of pathogenic splicing events from RNA-sequencing data using dasper
Although next-generation sequencing technologies have accelerated the discovery of novel gene-to-disease associations, many patients …
David Zhang
,
Regina H. Reynolds
,
Sonia Garcia Ruiz
,
Emil K Gustavsson
,
Sid Sethi
,
Sara Aguti
,
Ines A. Barbosa
,
Jack J. Collier
,
Henry Houlden
,
Robert McFarland
,
Francesco Muntoni
,
Monika Oláhová
,
Joanna Poulton
,
Michael Simpson
,
Robert D.S. Pitceathly
,
Robert W. Taylor
,
Haiyan Zhou
,
Charu Deshpande
,
Juan A. Botia
,
Leonardo Collado-Torres
,
Mina Ryten
Preprint
Cite
Code
Project
Slides
Source Document
DOI
BioC2020 recount workshop
recount workshop for BioC2020
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
Code
Project
Slides
Video
Regulatory sites for splicing in human basal ganglia are enriched for disease-relevant information
Genome-wide association studies have generated an increasing number of common genetic variants associated with neurological and …
Sebastian Guelfi __*__
,
Karishma D’Sa __*__
,
Juan Botía __*__
,
Jana Vandrovcova
,
Regina H. Reynolds
,
David Zhang
,
Daniah Trabzuni
,
Leonardo Collado-Torres
,
Andrew Thomason
,
Pedro Quijada Leyton
,
Sarah A. Gagliano
,
Mike A. Nalls
,
International Parkinson’s Disease Genomics Consortium (IPDGC)
,
UK Brain Expression Consortium
,
Kerrin S. Small
,
Colin Smith
,
Adaikalavan Ramasamy
,
John Hardy
,
Michael E. Weale †
,
Mina Ryten †
Preprint
PDF
Cite
Project
DOI
Recounting the FANTOM CAGE–Associated Transcriptome
Long noncoding RNAs (lncRNAs) have emerged as key coordinators of biological and cellular processes. Characterizing lncRNA expression …
Eddie-Luidy Imada __*__
,
Diego Fernando Sanchez __*__
,
Leonardo Collado-Torres
,
Christopher Wilks
,
Tejasvi Matam
,
Wikum Dinalankara
,
Aleksey Stupnikov
,
Francisco Lobo-Pereira
,
Chi-Wai Yip
,
Kayoko Yasuzawa
,
Naoto Kondo
,
Masayoshi Itoh
,
Harukazu Suzuki
,
Takeya Kasukawa
,
Chung-Chau Hon
,
Michiel JL de Hoon
,
Jay W Shin
,
Piero Carninci
,
Andrew E Jaffe
,
Jeffrey T Leek
,
Alexander Favorov
,
Glória R Franco
,
Benjamin Langmead †
,
Luigi Marchionni †
Preprint
PDF
Cite
Code
Dataset
Project
DOI
BioC2019 recount workshop
recount workshop for BioC2019
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
Code
Project
Slides
recount-brain: a curated repository of human brain RNA-seq datasets metadata
Leonardo Collado-Torres
PDF
Code
Project
recount-brain: a curated repository of human brain RNA-seq datasets metadata
The usability of publicly-available gene expression data is often limited by the availability of high-quality, standardized biological …
Ashkaun Razmara
,
Ellis SE
,
Sokolowski DJ
,
Davis S
,
Wilson MD
,
Leek JT
,
Jaffe AE
,
[__L Collado-Torres__](/authors/admin) †
Preprint
PDF
Cite
Code
Project
Poster
DOI
Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells
Understanding the molecular profile of every human cell type is essential for understanding its role in normal physi-ology and disease. …
Anil K Madugundu
,
Chan Hyun Na
,
Raja Sekhar Nirujogi
,
Santosh Renuse
,
Kwang Pyo Kim
,
Kathleen H. Burns
,
Christopher Wilks
,
Ben Langmead
,
Shannon E. Ellis
,
Leonardo Collado-Torres
,
Marc K. Halushka
,
Min-Sik Kim
,
Akhilesh Pandey †
PDF
Cite
Project
DOI
Reproducible RNA-seq analysis with recount2
Junior Research Symbiont Award Presentation for Excellence in Data Sharing at PSB2019
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
Project
Slides
Reproducible RNA-seq analysis with recount2 and recount-brain
Work in progress presentation on recount-brain for the Joint Genomics Meeting
Leonardo Collado-Torres
Last updated on Fri, May 14, 2021
Project
Slides
»
Cite
×