Image credit: F1000Research

recount2

Image credit: F1000Research

recount2

In 2015 we re-processed all the human RNA-seq that was publicly available at the time in an effort to improve the usability of this complex type of data and to facilitate developing new bioinformatic and biostatistical methods. Via recount2 we have democratized the access to this rich data and this project has lead to many different publications by the recount2 team and other researchers.

More recently, we are working on a subset of brain samples from recount2 for the recount-brain project lead by Ashkaun Razmara.

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Leonardo Collado-Torres
Staff Scientist II

Brain genomics #rstats coder working w/ @andrewejaffe @LieberInstitute. @lcgunam @jhubiostat @jtleek alumni. @LIBDrstats @CDSBMexico co-founder.

Publications

The usability of publicly-available gene expression data is often limited by the availability of high-quality, standardized biological …

Background: Publicly available genomic data are a valuable resource for studying normal human variation and disease, but these data are …

More than 70,000 short-read RNA-sequencing samples are publicly available through the recount2 project, a curated database of summary …

recount2 is a resource of processed and summarized expression data spanning over 70,000 human RNA-seq samples from the Sequence Read …

We describe Rail-RNA, a cloud-enabled spliced aligner that analyzes many samples at once. Rail-RNA eliminates redundant work across …

Talks

Update on BrainSeq Phase II and recount-brain for the LIBD 2019 staff seminar series

Junior Research Symbiont Award Presentation for Excellence in Data Sharing at PSB2019

Work in progress presentation on recount-brain for the Joint Genomics Meeting

Keynote to kickoff the CDSB Mexico 2018 R/Bioconductor workshop

Guest lecture for LCG-UNAM spanning some recent research

recount2 overview for the webinar organized by Dennis Dal

R/Bioconductor workshop on how to use recount2

recount2 overview for the ICSA 2017 conference

Showcasing how derfinder and recount2 can be used together to perform annotation-agnostic RNA-seq analyses at SOBP2017

Introduction of my work to kick off the epidemiology and biostatistics training for Kandahar University MPH faculty.

Desde que es derfinder hasta como se puede usar con recount2

Motivating SACNAS2016 attendees to pursue a career in STEM by showcasing my research

L. Collado-Torres’s Johns Hopkins Bloomberg School of Public Health, Department of Biostatistics Ph.D. defense talk