spatialLIBD

An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus
Cell types in the hippocampus with unique morphology, physiology and connectivity serve specialized functions associated with cognition …
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An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus
An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus
In the human brain, the dorsal anterior cingulate cortex (dACC) plays key roles in various components of cognitive control, and is …
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An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus
Initial impressions from testing Posit Connect
Two weeks ago I finished testing Posit Connect as a replacement to shinyapps.io. At the end of the trial period, I presented my conclusions during a LIBD rstats club session. Here you can read the detailed notes and watch the resulting video:
Last updated on Fri, Mar 14, 2025 8 min read rstats, LIBD
Lessons From Working On The Edge Of Human Brain Spatially-Resolved Transcriptomics
Spatial Biology West Coast US 2024
Last updated on Wed, Dec 11, 2024
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Lessons From Working On The Edge Of Human Brain Spatially-Resolved Transcriptomics
Integrating gene expression and imaging data across Visium capture areas with visiumStitched
Background Visium is a widely-used spatially-resolved transcriptomics assay available from 10x Genomics. Standard Visium capture areas …
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Integrating gene expression and imaging data across Visium capture areas with visiumStitched
Lessons from spatially-resolved transcriptomics of postmortem human brain data projects
Last updated on Mon, Aug 12, 2024
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Lessons from spatially-resolved transcriptomics of postmortem human brain data projects
HumanPilot: first spatially-resolved transcriptomics study using Visium
Would you prefer a video walkthrough over reading this blog post? Check out this explainer video 🎥 A few years ago now (2021) we published a study we refer to with a very generic name: HumanPilot (Maynard, Collado-Torres, Weber, Uytingco et al.
Last updated on Sat, May 25, 2024 13 min read Science, LIBD
Project
2024 Current Topics in Biostatistics guest seminar
Thanks @kenzhou86 & Margaret Taub for inviting to present at the Current Topics in Biostatistics seminar It was fun reminiscing about the past & sharing my experience. Got them to laugh a few times ^^
Last updated on Mon, Feb 26, 2024
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2024 Current Topics in Biostatistics guest seminar
Lessons from spatially-resolved transcriptomics of postmortem human brain data projects
Join me and others for free** at #FOGBoston October 4-5 2023 https://t.co/5BGgkBKZuN ⚾️🧦🎉 I'll talk about our work at @LieberInstitute @jhubiostat on spatially-resolved transcriptomics using #Visium #VisiumSPG by @10xGenomics 🎫 https://t.
Last updated on Mon, Feb 26, 2024
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Lessons from spatially-resolved transcriptomics of postmortem human brain data projects
Studying the human prefrontal cortex transcriptome at different resolutions
¡Seguimos! #LCG20 Simposio # 5: Spatial Transcriptomics https://t.co/I8J3PXRqAT @ccg_unam @ibt_unam @unammorelos @lcolladotor @daniela_oaks @roramirezf94 #EnVivo pic.twitter.com/mcrdyTABqa — LCG UNAM (@lcgunam) August 31, 2023
Last updated on Mon, Feb 26, 2024
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Studying the human prefrontal cortex transcriptome at different resolutions