SIGNIFICANT USER-VISIBLE CHANGES
use_bioc_github_action()has been updated to match as much as possible the changes in
r-lib/actionsup to the latest commit https://github.com/r-lib/actions/commit/630f4c9d8b813f45d0327a2fc20eb264fd518450.
use_bioc_github_action()now uses the AnVIL-powered package binaries, which greatly speed up the dependency installation steps in the docker (Linux) GitHub Actions builds. Details are available in Nitesh Turaga’s BioC2021 slides https://github.com/nturaga/bioc2021-bioconductor-binaries.
use_bioc_coc()as requested by Luke Zappia et al.
dockerargument which controls whether to build a docker image at the end of the GHA workflow (only on Linux) as requested by Kévin Rue-Albrecht.
RefManageRgiven the discussion at https://github.com/cboettig/knitcitations/issues/107.
NEWS.mdfile to track changes to the package.
bioc_style()which provides a partial Bioconductor coding style compatible with
use_bioc_vignette(). These functions provide Bioconductor-friendly alternatives to several functions in the
use_bioc_github_action()allows you to use a Bioconductor-friendly GitHub Actions workflow for checking your Bioconductor package (or one that depends on Bioconductor packages). Check the vignettes for details on its features as well as the developer notes.