L. Collado-Torres
L. Collado-Torres
Home
Team
Projects
Talks
Publications
Blog
Teaching
CV
Contact
Light
Dark
Automatic
English
Español
spatial
Applying Visium Spatial Proteogenomics (Visium-SPG) to study Alzheimer’s Disease
Talk at the Genomics of Brain Disorders 2023 conference
Leonardo Collado-Torres
Last updated on Tue, Jun 20, 2023
Project
Slides
Influence of Alzheimer’s disease related neuropathology on local microenvironment gene expression in the human inferior temporal cortex
Neuropathological lesions in the brains of individuals affected with neurodegenerative disorders are hypothesized to trigger molecular …
Sang Ho Kwon
,
Sowmya Parthiban
,
Madhavi Tippani
,
Heena R. Divecha
,
Nicholas J. Eagles
,
Jashandeep S. Lobana
,
Stephen R. Williams
,
Michelle Mak
,
Rahul A. Bharadwaj
,
Joel E. Kleinman
,
Thomas M. Hyde
,
Stephanie C. Page
,
Stephanie C. Hicks †
,
Keri Martinowich †
,
Kristen R. Maynard †
,
Leonardo Collado-Torres †
Cite
Project
DOI
Preprint
Code
Documentation
Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex
The molecular organization of the human neocortex has been historically studied in the context of its histological layers. However, …
Louise A. Huuki-Myers
,
Abby Spangler
,
Nicholas J. Eagles
,
Kelsey D. Montgomery
,
Sang Ho Kwon
,
Boyi Guo
,
Melissa Grant-Peters
,
Heena R. Divecha
,
Madhavi Tippani
,
Chaichontat Sriworarat
,
Annie B. Nguyen
,
Prashanthi Ravichandran
,
Matthew N. Tran
,
Arta Seyedian
,
PsychENCODE consortium
,
Thomas M. Hyde
,
Joel E. Kleinman
,
Alexis Battle
,
Stephanie C. Page
,
Mina Ryten
,
Stephanie C. Hicks
,
Keri Martinowich
,
Leonardo Collado-Torres †
,
Kristen R. Maynard †
Cite
Project
DOI
Preprint
Code
snRNA-seq code
Documentation
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments
High-resolution and multiplexed imaging techniques are giving us an increasingly detailed observation of a biological system. However, …
Chaichontat Sriworarat
,
Annie Nguyen
,
Nicholas J. Eagles
,
Leonardo Collado-Torres
,
Keri Martinowich
,
Kristen R. Maynard †
,
Stephanie C. Hicks †
Cite
Project
DOI
Preprint
Samui Browser
Code
Spatially-resolved Transcriptomics Analysis with R/Bioconductor and Beyond
Invited talk at Human Cell Atlas - Latin America 2022
Leonardo Collado-Torres
Last updated on Tue, May 9, 2023
Project
Slides
Spatially-resolved Transcriptomics Analysis with R/Bioconductor and Beyond
Invited talk at R/Medicine 2022
Leonardo Collado-Torres
Last updated on Tue, May 9, 2023
Project
Slides
Applications, limitations, and future directions of spatial transcriptomics technology in the human brain
RNA-seq Workshop at Montgomery College 2022
Leonardo Collado-Torres
Last updated on Tue, May 9, 2023
Project
Slides
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
Background
. Spatially-resolved transcriptomics has now enabled the quantification of high-throughput and transcriptome-wide gene …
Brenda Pardo
,
Abby Spangler
,
Lukas M. Weber
,
Stephanie C. Hicks
,
Andrew E. Jaffe
,
Keri Martinowich
,
Kristen R. Maynard
,
Leonardo Collado-Torres
Preprint
PDF
Cite
Code
Project
Slides
Source Document
DOI
Applications, limitations, and future directions of spatial transcriptomics technology in the human brain
The International Behavioural and Neural Genetics Society (IBANGS) Transcriptomics Workshop 2022
Leonardo Collado-Torres
Last updated on Tue, May 9, 2023
Project
Slides
VistoSeg: processing utilities for high-resolution Visium/Visium-IF images for spatial transcriptomics data
Background
: Spatial transcriptomics is a next-generation sequencing technology that combines the strengths of transcriptome-wide …
Madhavi Tippani
,
Heena R. Divecha
,
Joseph L. Catallini II
,
Sang Ho Kwon
,
Lukas M. Weber
,
Abby Spangler
,
Andrew E. Jaffe
,
Stephanie C. Hicks
,
Keri Martinowich
,
Leonardo Collado-Torres
,
Stephanie C. Page †
,
Kristen R. Maynard †
Cite
Project
DOI
Preprint
Code
Documentation
«
»
Cite
×