L. Collado-Torres
L. Collado-Torres
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spatial
VistoSeg: processing utilities for high-resolution Visium/Visium-IF images for spatial transcriptomics data
Background
: Spatial transcriptomics is a next-generation sequencing technology that combines the strengths of transcriptome-wide …
Madhavi Tippani
,
Heena R. Divecha
,
Joseph L. Catallini II
,
Sang Ho Kwon
,
Lukas M. Weber
,
Abby Spangler
,
Andrew E. Jaffe
,
Stephanie C. Hicks
,
Keri Martinowich
,
Leonardo Collado-Torres
,
Stephanie C. Page †
,
Kristen R. Maynard †
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Project
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Documentation
Spatial Transcriptomics Analysis of Aβ-tau Synergy in the Inferior Temporal Cortex of the Human Brain in Alzheimer’s Disease
Poster presented at BoG2022
Leonardo Collado-Torres
Project
Slides
SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor
Summary
SpatialExperiment is a new data infrastructure for storing and accessing spatially resolved transcriptomics data, implemented …
Dario Righelli __*__
,
Lukas M. Weber __*__
,
Helena L. Crowell __*__
,
Brenda Pardo
,
Leonardo Collado-Torres
,
Shila Ghazanfar
,
Aaron T. L. Lun,
,
Stephanie C. Hicks †
,
Davide Risso †
Preprint
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Project
Source Document
DOI
R/Bioconductor-powered Team Data Science (TLDR 2022)
For an overview of our recent work, check this video and companion slides.
Joshua M. Stolz
,
Nicholas J. Eagles
,
Louise A. Huuki-Myers
,
Leonardo Collado-Torres
Last updated on Tue, May 9, 2023
Project
Project
Slides
Extending Spatial Analysis with R/Bioconductor and beyond
Spatial Biology US 2021
Leonardo Collado-Torres
Last updated on Tue, May 9, 2023
Project
Slides
Studying the Topography of Spatial Gene Expression in the Human Brain
HBHL 2021 Keynote
Leonardo Collado-Torres
Last updated on Mon, May 8, 2023
Project
Slides
BioTuring webinar
BioTuring webinar presented along with Kristen R Maynard from the Lieber Institute for Brain Development.
Leonardo Collado-Torres
Last updated on Tue, Jun 20, 2023
Project
Slides
Video
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
We used the 10x Genomics Visium platform to define the spatial topography of gene expression in the six-layered human dorsolateral …
Kristen R Maynard __*__
,
[__Leonardo Collado-Torres__](/authors/admin) __*__
,
Lukas M. Weber
,
Cedric Uytingco
,
Brianna K. Barry
,
Stephen R. Williams
,
Joseph L. Catallini II
,
Matthew N. Tran
,
Zachary Besich
,
Madhavi Tippani
,
Jennifer Chew
,
Yifeng Yin
,
Joel E. Kleinman
,
Thomas M. Hyde
,
Nikhil Rao
,
Stephanie C. Hicks
,
Keri Martinowich †
,
Andrew E Jaffe †
Preprint
PDF
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Code
Dataset
Project
Source Document
DOI
CDC/ATSDR R User Group
Guest presentation for the CDC/ATSDR R User Group on spatialLIBD and recount3
Leonardo Collado-Torres
Last updated on Mon, May 8, 2023
Project
Project
Slides
Video
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
Poster on the HumanPilot project for BioC2020 using spatialLIBD.
Leonardo Collado-Torres
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