L. Collado-Torres
L. Collado-Torres
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rstats
HumanPilot: first spatially-resolved transcriptomics study using Visium
Would you prefer a video walkthrough over reading this blog post? Check out this explainer video 🎥 A few years ago now (2021) we published a study we refer to with a very generic name: HumanPilot (Maynard, Collado-Torres, Weber, Uytingco et al.
Leonardo Collado-Torres
Last updated on Sat, May 25, 2024
13 min read
Science
,
LIBD
Project
How to reduce the size of a large GitHub repo
This work was done by Leo with Erik Nelson and Ryan Miller. Thank you for your time and input! Oh ohh! My GitHub repository is huge! 😱 What do I do now?
Leonardo Collado-Torres
Last updated on Fri, May 24, 2024
24 min read
Computing
,
LIBD
,
rstats
The start of a new phase for me
Today I have accepted a new role at the Lieber Institute for Brain Development (LIBD) as an Investigator. Since LIBD is affiliated with Johns Hopkins University (JHU), LIBD will support me on becoming a JHU faculty member ^[The rules are Department and School specific at JHU, which is something that I have yet to explore in detail.
Last updated on Tue, Jul 11, 2023
5 min read
LIBD
,
rstats
Research Scientist: an academic career launch pad
After a long start to 2020 including the past four very busy weeks, I’m happy to announce that today March 16th 2020 I accepted a position as Research Scientist at the Lieber Institute for Brain Development in Baltimore, MD, USA.
Last updated on Tue, Jul 11, 2023
6 min read
rstats
,
Science
,
LIBD
Diving together into the unknown world of spatial transcriptomics
Yesterday was an extremely exciting day for me and my colleagues. We finished a project we had been working on and shared it with the world. Meaning, it’s done and we can relax for a little bit while we wait for feedback from our peers.
Last updated on Tue, Jul 11, 2023
17 min read
rstats
,
Science
Learning from our search history
Origin of the idea Recently the team I work with has had a few new members and I’ve been thinking lately of ways we could try to help them. The team leader was traveling this week, which gave me the opportunity to come up with a new type of session and test it out.
Last updated on Tue, Jul 11, 2023
13 min read
rstats
,
Ideas
Windows user space issues with installing R packages
Are you a Microsoft Windows R user? Does your Windows username include a space? Like Firstname Lastname. Then you might occassionally run into issues installing packages due to spaces. Solutions You could either re-install Windows with a username that has no spaces such as Lastname ^[This is the case in the Bioconductor Windows build machine where the username is biocbuild as you can see here.
Last updated on Tue, Jul 11, 2023
11 min read
rstats
Steps for writing a Twitter summary conference blog post
I recently wrote several blog posts with many tweets1 as a way of taking notes during the American Society of Human Genetics 2018 conference. A few friends asked me how I did this so fast.
Last updated on Tue, Jul 11, 2023
6 min read
Conference
,
rstats
R Gene Regulatory Interaction Formulator For Inquiring Networks
This blog post was written by ME Martinez-Sanchez, S Muñoz, M Carrillo, E Azpeitia, D Rosenblueth and originally posted at the CDSB blog.1 In this blog post we will describe the package rGriffin (Martinez-Sanchez, Muñoz, Carrillo, Azpeitia, et al.
Last updated on Sun, May 1, 2022
8 min read
rstats
,
UNAM
Getting ready to attend rOpenSci unconf18 and probably working on tidyverse-like functions for the first time
It’s Friday 7pm and it’s been a long week with ups and downs1. But I’m enthused as I write this blog post. In less than a month from now I’ll be attending rOpenSci unconf18 and it’ll be my first time at this type of event.
Last updated on Tue, Jul 11, 2023
9 min read
rstats
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