17 Introduction to the world of spatially-resolved transcriptomics with Visium data
Instructor: Leo
Thank you #GBD23 @MinaRyten @LabGandhi John Hardy 🇬🇧 for hosting us!🙌🏽
— 🇲🇽 Leonardo Collado-Torres (@lcolladotor) May 25, 2023
Hopefully our #deconvochallenge #spatialLIBD #spatialDLPFC #Visium_SPG_AD work + @Bioconductor 📦s + @10xGenomics @LieberInstitute data will be useful to you@eventsWCS @UCLchildhealth @TheCrick @UCLIoN @ucl pic.twitter.com/vJcpL4tcQK
SummarizedExperiment –> SingleCellExperiment –> SpatialExperiment –> spatialLIBD
17.1 Community
Are you analyzing spatially-resolved transcriptomics data? Visium from @10xGenomics? You might want to use #SpatialExperiment which provides a common infrastructure fully compatible with @Bioconductor's ecosystem #rstats
— 🇲🇽 Leonardo Collado-Torres (@lcolladotor) April 29, 2022
More details? Open access paper 📜https://t.co/4Y2RN4Wz2z https://t.co/49wE5Dv5HF pic.twitter.com/QpI4lvCF2r
Our paper describing our package #spatialLIBD is finally out! 🎉🎉🎉
— Brenda Pardo (@PardoBree) April 30, 2021
spatialLIBD is an #rstats / @Bioconductor package to visualize spatial transcriptomics data.
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This is especially exciting for me as it is my first paper as a first author 🦑.https://t.co/COW013x4GA
1/9 pic.twitter.com/xevIUg3IsA