L. Collado-Torres
L. Collado-Torres
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Regulatory sites for splicing in human basal ganglia are enriched for disease-relevant information
Genome-wide association studies have generated an increasing number of common genetic variants associated with neurological and …
Sebastian Guelfi __*__
,
Karishma D’Sa __*__
,
Juan Botía __*__
,
Jana Vandrovcova
,
Regina H. Reynolds
,
David Zhang
,
Daniah Trabzuni
,
Leonardo Collado-Torres
,
Andrew Thomason
,
Pedro Quijada Leyton
,
Sarah A. Gagliano
,
Mike A. Nalls
,
International Parkinson’s Disease Genomics Consortium (IPDGC)
,
UK Brain Expression Consortium
,
Kerrin S. Small
,
Colin Smith
,
Adaikalavan Ramasamy
,
John Hardy
,
Michael E. Weale †
,
Mina Ryten †
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DOI
Recounting the FANTOM CAGE–Associated Transcriptome
Long noncoding RNAs (lncRNAs) have emerged as key coordinators of biological and cellular processes. Characterizing lncRNA expression …
Eddie-Luidy Imada __*__
,
Diego Fernando Sanchez __*__
,
Leonardo Collado-Torres
,
Christopher Wilks
,
Tejasvi Matam
,
Wikum Dinalankara
,
Aleksey Stupnikov
,
Francisco Lobo-Pereira
,
Chi-Wai Yip
,
Kayoko Yasuzawa
,
Naoto Kondo
,
Masayoshi Itoh
,
Harukazu Suzuki
,
Takeya Kasukawa
,
Chung-Chau Hon
,
Michiel JL de Hoon
,
Jay W Shin
,
Piero Carninci
,
Andrew E Jaffe
,
Jeffrey T Leek
,
Alexander Favorov
,
Glória R Franco
,
Benjamin Langmead †
,
Luigi Marchionni †
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Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs
Human induced pluripotent stem cells (hiPSCs) are a powerful model of neural differentiation and maturation. We present a hiPSC …
Emily E Burke __*__
,
Joshua G Chenoweth __*__
,
Joo Heon Shin
,
Leonardo Collado-Torres
,
Suel Kee Kim
,
Nicola Micali
,
Yanhong Wang
,
Carlo Colantuoni
,
Richard E Straub
,
Daniel J Hoeppner
,
Huei-Ying Chen
,
Alana Sellers
,
Kamel Shibbani
,
Gregory R Hamersky
,
Marcelo Diaz Bustamante
,
BaDoi N Phan
,
William S Ulrich
,
Cristian Valencia
,
Amritha Jaishankar
,
Amanda J Price
,
Anandita Rajpurohit
,
Stephen A Semick
,
Roland Bürli
,
James C Barrow
,
Daniel J Hiler
,
Stephanie Cerceo Page
,
Keri Martinowich
,
Thomas M Hyde
,
Joel E Kleinman
,
Karen F Berman
,
José A Apud
,
Alan J Cross
,
Nick J Brandon
,
Daniel R Weinberger
,
Brady J Maher
,
Ronald DG McKay †
,
Andrew E Jaffe †
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Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation
Background
: DNA methylation (DNAm) is a critical regulator of both development and cellular identity and shows unique patterns in …
Amanda J. Price __*__
,
[__Leonardo Collado-Torres__](/authors/admin) __*__
,
Nikolay A. Ivanov
,
Wei Xia
,
Emily E. Burke
,
Joo Heon Shin
,
Ran Tao
,
Liang Ma
,
Yankai Jia
,
Thomas M. Hyde
,
Joel E. Kleinman
,
Daniel R. Weinberger
,
Andrew E Jaffe †
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Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods
Background: RNA sequencing offers advantages over other quantification methods for microRNA (miRNA), yet numerous biases make reliable …
Carrie Wright __*__
,
Anandita Rajpurohit __*__
,
Emily E. Burke
,
Courtney Williams
,
Leonardo Collado-Torres
,
Martha Kimos
,
Nicholas J. Brandon
,
Alan J. Cross
,
Andrew E. Jaffe
,
Daniel R. Weinberger †
,
Joo Heon Shin †
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Regional heterogeneity in gene expression, regulation, and coherence in the frontal cortex and hippocampus across development and schizophrenia
The hippocampus formation, although prominently implicated in schizophrenia pathogenesis, has been overlooked in large-scale genomics …
Leonardo Collado-Torres
,
Emily E Burke
,
Amy Peterson
,
JooHeon Shin
,
Richard E Straub
,
Anandita Rajpurohit
,
Stephen A Semick
,
William S Ulrich
,
BrainSeq Consortium
,
Amanda J Price
,
Cristian Valencia
,
Ran Tao
,
Amy Deep-Soboslay
,
Thomas M Hyde
,
Joel E Kleinman
,
Daniel R Weinberger †
,
Andrew E Jaffe †
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Project
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Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells
Understanding the molecular profile of every human cell type is essential for understanding its role in normal physi-ology and disease. …
Anil K Madugundu
,
Chan Hyun Na
,
Raja Sekhar Nirujogi
,
Santosh Renuse
,
Kwang Pyo Kim
,
Kathleen H. Burns
,
Christopher Wilks
,
Ben Langmead
,
Shannon E. Ellis
,
Leonardo Collado-Torres
,
Marc K. Halushka
,
Min-Sik Kim
,
Akhilesh Pandey †
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Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer's disease
Late-onset Alzheimer’s disease (AD) is a complex age-related neurodegenerative disorder that likely involves epigenetic factors. To …
Stephen A Semick
,
Rahul A Bharadwaj
,
Leonardo Collado-Torres
,
Ran Tao
,
Joo Heon Shin
,
Amy Deep-Soboslay
,
James Weiss
,
Daniel R Weinberger
,
Thomas M Hyde
,
Joel E Kleinman
,
Andrew E Jaffe †
,
Venkata S Mattay †
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Project
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Non-coding Class Switch Recombination-Related Transcription in Human Normal and Pathological Immune Responses
Background: Antibody class switch recombination (CSR) to IgG, IgA or IgE is a hallmark of adaptive immunity, allowing antibody function …
Helena Kuri-Magaña
,
Leonardo Collado-Torres
,
Andrew E Jaffe
,
Humberto Valdovinos-Torres
,
Marbella Ovilla-Muñoz
,
Juan M Téllez-Sosa
,
Laura C Bonifaz-Alfonzo
,
Jesús Martínez-Barnetche
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Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome
This paper is on smoking and its relation to gene expression at different life stages. These genes are also related to autism spectrum disorder.
Semick SA
,
Leonardo Collado-Torres
,
Markunas CA
,
Shin JH
,
Deep-Soboslay A
,
Tao R
,
Huestis MA
,
Bierut LJ
,
Maher BS
,
Johnson EO
,
Hyde TM
,
Weinberger DR
,
Hancock DB
,
Kleinman JE †
,
Jaffe AE †
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