Publications

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Improving the value of public RNA-seq expression data by phenotype prediction

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Altered expression of histamine signaling genes in autism spectrum disorder

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Reproducible RNA-seq analysis using recount2

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Developmental and genetic regulation of the human cortex transcriptome in schizophrenia

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Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive

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Flexible expressed region analysis for RNA-seq with derfinder

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Rail-RNA: Scalable analysis of RNA-seq splicing and coverage

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regionReport: Interactive reports for region-level and feature-level genomic analyses

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Annotation-agnostic RNA-seq differential expression analysis software

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Developmental regulation of human cortex transcription and its clinical relevance at single base resolution

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Measurement, Summary, and Methodological Variation in RNA-sequencing in Statistical Analysis of Next Generation Sequencing Data

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Fast Annotation-Agnostic Differential Expression Analysis

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Interspecies interactions that result in Bacillus subtilis forming biofilms are mediated mainly by members of its own genus

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RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

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Global Analysis of Transcription Start Sites and Transcription Units in Bacterial Genomes

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